PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G027700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 313aa    MW: 34219.2 Da    PI: 4.614
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G027700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.4e-35251162102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k
  Manes.14G027700.1.p  25 FLTKTYQLVDDQTIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRKGEK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                           ll++i+r+k 
  Manes.14G027700.1.p 106 ILLCDIQRRKI 116
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3714108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.78E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.7E-4172199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAPPPVEQNG ETTAVESQRS LPTPFLTKTY QLVDDQTIDD VISWNDDGST FIVWNPTVFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNDCF RKGEKILLCD IQRRKISTQA  120
VGTATQPTPV AIAASAIPTA KPMISPSNSG DGQVISTNSS PSRGVQVSGP STELLDENER  180
LRKENVQLSK ELTEMKNLCS NIFGLVSNYA VCQSEGGFQT SEGGGFSTVK PVDFLQEKQF  240
GGEEDDTSAR LFGVAIGVKR AREGEGAAMD NDAQLQLQLQ LQQPRANSVK VEPLDCQNNA  300
MNGDDESRLA AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-242511429129Heat shock factor protein 1
5d5v_B9e-242511429129Heat shock factor protein 1
5d5v_D9e-242511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G027700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634042.10.0heat stress transcription factor B-2b-like
SwissprotQ9SCW41e-87HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2C9UIG40.0A0A2C9UIG4_MANES; Uncharacterized protein
STRINGcassava4.1_012303m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-90heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]