PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G029300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 129aa    MW: 14318.4 Da    PI: 8.6915
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.25e-4251041100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp+++r +a++sl+yeA++r++dPvyG+vg+i+ l+qq++ +
  Manes.14G029300.1.p   5 RCAACKYLRRRCPSDCIFSPYFPSNDPQRFACVHKIYGASNVGKMLQQLPTHQRVQAANSLFYEAQCRIQDPVYGCVGIISLLHQQIHIA 94 
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la++++e
  Manes.14G029300.1.p  95 QNQLAKTQAE 104
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.0384105IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-415102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNSDRCAACK YLRRRCPSDC IFSPYFPSND PQRFACVHKI YGASNVGKML QQLPTHQRVQ  60
AANSLFYEAQ CRIQDPVYGC VGIISLLHQQ IHIAQNQLAK TQAEIAVLST SHAPDSQFQP  120
NLAATRPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-40610512111LOB family transfactor Ramosa2.1
5ly0_B3e-40610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G029300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592041.13e-91LOB domain-containing protein 24-like
SwissprotP594676e-57LBD23_ARATH; LOB domain-containing protein 23
TrEMBLA0A2C9UJB06e-90A0A2C9UJB0_MANES; Uncharacterized protein
STRINGcassava4.1_026224m1e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-59LOB domain-containing protein 23