PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G029400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 662aa    MW: 71775.4 Da    PI: 7.6088
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G029400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.3e-24213266155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+++ Wt++LH+ F++av+++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Manes.14G029400.1.p 213 KAKVIWTNTLHDLFLQAVSHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRM 266
                          67999****************.********************************7 PP
2Response_reg72.61.5e-24231301108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l+vdD+ + + ++ ++l+k  + +v +++++ +al +l+ ++  +Dl+++D+ mp m+Glel k+ +ee  k+p+i+++a ++e+ +l+
  Manes.14G029400.1.p  23 ILVVDDDSTSLAIVSSMLKKCSL-QVVTVKNSLDALSNLRVQNgaFDLVITDLHMPVMNGLELQKQVKEEF-KIPVIIMSADDKEKEILK 110
                          89*********************.9999***********888888************************99.****************** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                           l+  a  +  Kp++pe+l 
  Manes.14G029400.1.p 111 SLESEAAFYMKKPVNPEDLK 130
                          *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.6E-3520168No hitNo description
SMARTSM004481.3E-2421133IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.42E-2921138IPR011006CheY-like superfamily
PROSITE profilePS5011037.26722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2123130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.25E-2524136No hitNo description
PROSITE profilePS5129410.424210269IPR017930Myb domain
SuperFamilySSF466891.13E-18211270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-25212270IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25213266IPR006447Myb domain, plants
PfamPF002497.4E-6218265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MSNGGIASSQ SLKKKTSLFK IQILVVDDDS TSLAIVSSML KKCSLQVVTV KNSLDALSNL  60
RVQNGAFDLV ITDLHMPVMN GLELQKQVKE EFKIPVIIMS ADDKEKEILK SLESEAAFYM  120
KKPVNPEDLK IVWQYAVASK KGKKVVMEQE IGSGQEETSS NDKLHHISSS SENEESGPKK  180
KKGRKRVRDQ GQEERDAAPA QAAAAPAPAP PKKAKVIWTN TLHDLFLQAV SHIGLEKAVP  240
KKILEFMNVP GLTRENVASH LQKYRMFLKK VAEKGFWTSR SLAERAFRSS FANGYTSMYQ  300
NPHKQFSPFL GQQPSFQPGY GGNLSGFRSS SSGLSRFPSQ EAPTSNSVPQ LHYGQSSLFG  360
NPTSFQQRPL VFANPCLANR STSNNTGINL SSDTATQHGL TIGATPMQMQ QQQNQANPQS  420
NIIDTPFTLL STGIGCSSMA TSNYAGIILT SDGELIGTGK TRFNGIDLSS GSNNGGKVLM  480
NMTHDNSMNN PPTGNGIFGG LCAQGSCSSS TVLGSTNQYS PTFIATNQEN TLMLPPQSQQ  540
HTSTGLRNAG GENDLMTNAS TLGTISDNHQ QELGEVDLDE LLFGSPYTTP YQDQNSEVSM  600
NVNLHSSPYQ AEVGGPVNEF LNSEFSTLCT IADQTPWSEK SSAQASSRQG RNGESRLWWQ  660
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21212272464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G029400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593193.10.0putative two-component response regulator ARR21
TrEMBLA0A2C9UI060.0A0A2C9UI06_MANES; Uncharacterized protein
STRINGcassava4.1_033683m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-47response regulator 2