PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G038900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 237aa    MW: 26378.6 Da    PI: 6.3971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G038900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-18119169255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+f++  +Aaka++ a+ +l+g
  Manes.14G038900.1.p 119 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDSDVDAAKAYDCAAFRLRG 169
                          8********.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-29118177No hitNo description
Gene3DG3DSA:3.30.730.106.5E-31118178IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22119178IPR016177DNA-binding domain
PfamPF008471.1E-12119169IPR001471AP2/ERF domain
PROSITE profilePS5103224.329119177IPR001471AP2/ERF domain
SMARTSM003804.5E-34119183IPR001471AP2/ERF domain
PRINTSPR003674.9E-13120131IPR001471AP2/ERF domain
PRINTSPR003674.9E-13159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MATSNPTPDE SSALELIRQH LLGDFSSTDV FISNLDSHIS SLNCNLQPIK LEYHDCLSAS  60
ESYSPVSPTT HSTHQSCNFR PKTELVDSTS PERSDSAEHY PLPEPLLDPK PTDDEDKKHY  120
RGVRRRPWGK FAAEIRDPNR KGSRVWLGTF DSDVDAAKAY DCAAFRLRGR KAILNFPLEA  180
GLADPPANTG RKRRRVKKAE LSPDSVDFPS AISEVEVIFC EEQLSPLPRK PVLMTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28118178464ATERF1
3gcc_A2e-28118178464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
2190197RKRRRVKK
3191195KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G038900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634663.11e-174ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY052e-46EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A2C9UIS11e-173A0A2C9UIS1_MANES; Uncharacterized protein
STRINGcassava4.1_015180m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-47ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]