PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G055400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 269aa MW: 31202 Da PI: 9.0261

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G055400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	102	125	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ +L +H + H Manes.14G055400.1.p 102 WKCGYCKKSFRAERYLDQHFDNrH 125 58*****************76666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.642	102	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEKTTAATLV LLLFTIFLQQ ALFQAFGEDA AERMVQQGKE HAHEVHCSRE RSKAAWKILE 60 EYLMPFVERE NYQISSKCRL HPDNDLFRDQ EQHKIHVDIN EWKCGYCKKS FRAERYLDQH 120 FDNRHYNLLN VSEGKCLADL CGALHCDFVM NSKSPRTKCN PAAVAKNRHL CESLADRCFP 180 LNQGRSASHL HELFLHQFCD AHTCSGKKKH FPKGGKKQTS VIYLAVSILT LMLLPLFYLI 240 VYLYQREMRQ GKQELRRITR VGQKTKPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G055400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592985.1	0.0	uncharacterized protein LOC110600431 isoform X1
TrEMBL	A0A2C9UJ37	0.0	A0A2C9UJ37_MANES; Uncharacterized protein
STRING	cassava4.1_015196m	1e-178	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-115	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.14G055400.1.p