PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G055400.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 254aa MW: 29485.9 Da PI: 8.8183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G055400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	87	110	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ +L +H + H Manes.14G055400.2.p 87 WKCGYCKKSFRAERYLDQHFDNrH 110 58*****************76666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.642	87	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLGFVDLCQA FGEDAAERMV QQGKEHAHEV HCSRERSKAA WKILEEYLMP FVERENYQIS 60 SKCRLHPDND LFRDQEQHKI HVDINEWKCG YCKKSFRAER YLDQHFDNRH YNLLNVSEGK 120 CLADLCGALH CDFVMNSKSP RTKCNPAAVA KNRHLCESLA DRCFPLNQGR SASHLHELFL 180 HQFCDAHTCS GKKKHFPKGG KKQTSVIYLA VSILTLMLLP LFYLIVYLYQ REMRQGKQEL 240 RRITRVGQKT KPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G055400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592985.1	0.0	uncharacterized protein LOC110600431 isoform X1
TrEMBL	A0A2C9UJA4	0.0	A0A2C9UJA4_MANES; Uncharacterized protein
STRING	cassava4.1_015196m	1e-177	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-115	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.14G055400.2.p