PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G055800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 491aa    MW: 55027.7 Da    PI: 5.2056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G055800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.11.5e-13153175426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C+++++tGtCk+G++CkF+H+
  Manes.14G055800.2.p 153 EDCSYYMKTGTCKFGSNCKFNHP 175
                          89********************8 PP
2zf-CCCH31.82.4e-10192217227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++ +C++++rtG CkyG  C+++H++
  Manes.14G055800.2.p 192 GQTECKYYLRTGGCKYGKACRYNHSR 217
                          6789********************95 PP
3zf-CCCH39.87.7e-13245269226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G CkyG++C+F+H+
  Manes.14G055800.2.p 245 GEKECPYYMRNGSCKYGANCRFNHP 269
                          7899********************9 PP
4zf-CCCH30.94.7e-10379405127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+ ++Ck++H++
  Manes.14G055800.2.p 379 PGQPECSYYLKTGDCKFRSNCKYHHPK 405
                          5789*********************96 PP
5zf-CCCH33.57.3e-11429450526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++r+G+Ck+G+ CkF H+
  Manes.14G055800.2.p 429 ICSYYSRYGICKFGPACKFDHP 450
                          7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-6148177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315149177IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7149176IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5155174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577190218IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5190217IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8192217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6193219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5196217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324243271IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7243270IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10245269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6245270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5249268IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4378405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08378406IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6380405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5382407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6422450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967424452IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6424451IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8429450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDYSEPSNFL TDTADTNPKF GFQSSLPSSN ADPGSDQTLE LRKELEKKQL YLKEGKGENE  60
EAEPDMVVVE KVYEELEKQL HLKEVEEDNH SIEWNQNDDF NCGESHDGEE GLNKYDKEDD  120
GNDDEKYDDE VEKRDERSNG NRRHHYPVRP EAEDCSYYMK TGTCKFGSNC KFNHPATKEK  180
LKEREEAIER PGQTECKYYL RTGGCKYGKA CRYNHSRAKT PVLPAKAAVF PVLDLNFLGL  240
PIRPGEKECP YYMRNGSCKY GANCRFNHPD PTAAGGTDPP SGFGNGGTAA LQSSPQSSVA  300
PWSSPRGLSE AAPFMPMMFP PTQGVPSQSP EWNGYQAPIY PQERSMHPTS AFVMSNTATD  360
TNVYVHQQQT PFDEFPERPG QPECSYYLKT GDCKFRSNCK YHHPKNQIPK SSPCPLSDKG  420
LPLRPGQHIC SYYSRYGICK FGPACKFDHP IHPAAMTGSA EDQAHQDLAR EESRISETGN  480
ETDTAIQQAV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G055800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592032.10.0zinc finger CCCH domain-containing protein 43-like isoform X2
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2C9UK380.0A0A2C9UK38_MANES; Uncharacterized protein
STRINGcassava4.1_006776m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]