PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G067000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 180aa    MW: 20397 Da    PI: 10.1127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G067000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-101364555
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                          + +Er+RR +++   ++L +l+P+  +k ++  ls    L +A  YIk+L+
  Manes.14G067000.1.p 13 RKTVERNRRIHMKGLCFKLASLIPShHFKHSKDMLSQQGQLDHAAAYIKHLK 64
                         6789*********************888877777****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.743863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-91078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-101076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00541469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.83E-51668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKKSISESSR PDRKTVERNR RIHMKGLCFK LASLIPSHHF KHSKDMLSQQ GQLDHAAAYI  60
KHLKERIEKL KKIKEQAMVI SGANNNKIMM GLRLPIVELR DLGSSIEVVL ISGLKKNFMM  120
YEVITIIEEE GAEVVSVSFS TVGDKVFHTI HAQVKICRVG VETSRVCQRL QELIDWSCI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G067000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634531.11e-129transcription factor bHLH162-like
TrEMBLA0A2C9UKM11e-128A0A2C9UKM1_MANES; Uncharacterized protein
STRINGcassava4.1_017345m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-21bHLH family protein