PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G074500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 235aa    MW: 27057.9 Da    PI: 4.3481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G074500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-191669356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         k+++++ +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Manes.14G074500.1.p 16 KKRRLSIDQVRFLEKSFEIENKLEPERKNQLAKDLGLQPRQVAIWFQNRRARWK 69
                         5668999**********************************************9 PP
2HD-ZIP_I/II129.41.4e-4115106192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qv++LE+sFe e+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L ke+++L++e
  Manes.14G074500.1.p  15 EKKRRLSIDQVRFLEKSFEIENKLEPERKNQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQTSYNSLKADCDTLLKEKDKLNAE 104
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          ++
  Manes.14G074500.1.p 105 VN 106
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.2481171IPR001356Homeobox domain
SuperFamilySSF466891.41E-181481IPR009057Homeodomain-like
SMARTSM003891.8E-181475IPR001356Homeobox domain
PfamPF000463.3E-161669IPR001356Homeobox domain
CDDcd000861.46E-161672No hitNo description
Gene3DG3DSA:1.10.10.601.4E-191879IPR009057Homeodomain-like
PRINTSPR000317.3E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000317.3E-65167IPR000047Helix-turn-helix motif
PfamPF021832.1E-1571112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
ENVDDELDEY FHQPEKKRRL SIDQVRFLEK SFEIENKLEP ERKNQLAKDL GLQPRQVAIW  60
FQNRRARWKT KQLEKDYEAL QTSYNSLKAD CDTLLKEKDK LNAEVNLLTE KLLLREEKVK  120
LESSEKEILS EEPQKKPIGD SASEDEGSKI SSVACKQEDI SSAKSDIFDS DSPHYTDGVH  180
SSLFEAEQSD LSQDEEDNLS KGLLPAYVFP KLEDADYSDP PASFEDNALW CWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G074500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592135.11e-168homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-43HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2C9UJV51e-167A0A2C9UJV5_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_012777m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-41homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]