PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G075800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 549aa    MW: 59901.8 Da    PI: 7.9863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G075800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29191250159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++ Yeg+Hnh+
  Manes.14G075800.2.p 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTLAsSCPVRKQVQRCAEDMSILITSYEGTHNHP 250
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30176252IPR003657WRKY domain
SuperFamilySSF1182908.76E-27183252IPR003657WRKY domain
PROSITE profilePS5081128.105186252IPR003657WRKY domain
SMARTSM007746.2E-34191251IPR003657WRKY domain
PfamPF031065.2E-26192250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQKEQDSSLK AVRAEMGEVR EENKRLKMHL GQMMKDYQAL HMKFYDIIQQ DETKKSTSTV  60
DNSHQAFEEP ELVSLSLGRF SSESKNDGKS KTYSHGKDEE DEKANNEGDL SLRLDCKFEV  120
SKFRNANETL PNPSSPVNIF KDKPKEEVEE TWPPPKVLKT MPSGGEDEVA QQCPLKKARV  180
YVRMRCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTLA SSCPVRKQVQ RCAEDMSILI  240
TSYEGTHNHP LPLSATFMAS TTSSAASMLL SGSLSSSFRT NPNPSATSSS TSADLHGLNF  300
YLAKDSNSNQ FYLHNSSLSA SPSHSTITID LTSNPSSSQF NRFNSSYAPN PKFAPASLNF  360
SSSESNVIPW GNGLLIHGST SQLYSRNQLG KLNLGGRPPM EHSLFQPYMQ QKTPVTSQQP  420
LPDTIAAATK AITTDPSFQS ALVAALKSII GNESGSDNGG SSDGASMGGG DHLAQKLKWG  480
EHFPLASGYL HLSSPTPKGN KIACTTSYLN KTTSANSQPE SMFLPTSLPF PSPKSASAFP  540
GDDRDHSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18178252174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G075800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276360.0KT827636.1 Manihot esculenta WRKY transcription factor 61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591934.10.0probable WRKY transcription factor 61
TrEMBLA0A2C9UKQ40.0A0A2C9UKQ4_MANES; Uncharacterized protein
STRINGcassava4.1_004929m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-62WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]