PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G084400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 150aa    MW: 17198.4 Da    PI: 6.7829
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G084400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.24.1e-29111411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkat 86 
                          lp+G+rF Ptdeelv++yL +k+  k+   ++ + i+  ++y+  P++L  +++ +e+ewyfF+  ++ +  ++++ r++    g+Wk++
  Manes.14G084400.1.p  11 LPVGYRFLPTDEELVTHYLMNKAFYKPlpAHVGQDINASELYSKPPNTLV-TLSCGEREWYFFIYGEEDSVGERKTIRIVGdgIGFWKSS 99 
                          799***********************9443344459999**********6.777899**********9999889999987734678**** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g++k++++++g++ glk  +++++g+ p++++t+W m+ yrl
  Manes.14G084400.1.p 100 GQEKSICNSDGNVFGLKFQFTYFSGTFPNAKRTHWRMDVYRL 141
                          ****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-318144IPR003441NAC domain
PROSITE profilePS5100530.79511150IPR003441NAC domain
PfamPF023658.9E-1712141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDGQSGILAE LPVGYRFLPT DEELVTHYLM NKAFYKPLPA HVGQDINASE LYSKPPNTLV  60
TLSCGEREWY FFIYGEEDSV GERKTIRIVG DGIGFWKSSG QEKSICNSDG NVFGLKFQFT  120
YFSGTFPNAK RTHWRMDVYR LPTQYYPAQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-171114115140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G084400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051840.0KR605184.1 Manihot esculenta NAC transcription factors 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593027.11e-111NAC domain-containing protein 101-like
TrEMBLA0A0M4FP221e-109A0A0M4FP22_MANES; NAC transcription factors 46
STRINGcassava4.1_022395m1e-110(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-23NAC-domain protein 101
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]