PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G092200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 552aa    MW: 59181.2 Da    PI: 6.11
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09367415355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Manes.14G092200.1.p 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17362432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEMGDKDKFE LEKSDNHVNY HSPDSMPSDW RFSSANIANS SLGLVPTDNQ MPVCREDLVG  60
VSSCSSASMV DSFGPGLWDH TTNPQNLGFS EVSVQNNAST SNPIGIRKSG PASLRTGLVK  120
TLDIGWNPPS SMLKGGIFLP TAPGVLPQSL SQFPADSAFI ERAARFSCFN GGNFSDIVNP  180
FGIPESMHLY SRGGGMMQGP QDVFAGSELK SVSGGQGQKN VGDAPLSVEH VAIEGSPLNT  240
QKKSGSLVRS HDEAKQGLGG SGNESEAAEF SGGGRQDEPS MLEGNGGELT AKSLASKKRK  300
RNGQDTEIDQ AKGTQQSSPE VQQKGEENPI STPNKTTGKQ SKQGSQASDP PKQEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDVSIEGLL AKDILHSRAV PPSTLAFSPE VPMVYPPFNA SQPGLIQPSF  480
PGMESHSDVL RRAINSQLIP MTGGFKEPTQ LPSAWDDELH NVVQMSYVTS APQDGQDING  540
SLPPGHMKAE L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G092200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591999.10.0transcription factor bHLH49
RefseqXP_021592000.10.0transcription factor bHLH49
TrEMBLA0A2C9UL540.0A0A2C9UL54_MANES; Uncharacterized protein
STRINGcassava4.1_004886m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-122bHLH family protein