PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G098000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 367aa    MW: 40348.4 Da    PI: 9.6623
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G098000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.4e-1466114155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Manes.14G098000.1.p  66 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 114
                          89****9888.8*********3.....5**********99*************98 PP
2B3105.13.5e-33199299196
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+ tpsdv+k++rlv+pk++ae+h     g+++++++ l +ed sg++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++
  Manes.14G098000.1.p 199 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsGNNSTKGVLLNFEDISGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRS 288
                          89*****************************99999****************************************************87 PP

                          SSSEE..EEEE CS
                   B3  86 grsefelvvkv 96 
                             +++l++ +
  Manes.14G098000.1.p 289 TGPDKQLYIDW 299
                          66777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-2566124No hitNo description
PfamPF008477.1E-966114IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1766122IPR016177DNA-binding domain
SMARTSM003804.2E-2867128IPR001471AP2/ERF domain
PROSITE profilePS5103220.29767122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2067122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-42193305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-32197300IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-30198288No hitNo description
PROSITE profilePS5086314.565199303IPR003340B3 DNA binding domain
PfamPF023624.7E-30199300IPR003340B3 DNA binding domain
SMARTSM010192.6E-25199303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDGSCTDEST TSETLSISIS PTSAVSSFPP PTKSPESPLG RVGSGSSVIL DSESGVEAES  60
RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDIAAQ RFRGRDAITN  120
FKPQGAETEA DDIEAAFLNS HSKAEIVDML RKHTYDDELE QSKRNYKIDG LGKQNRNPGA  180
NNVALSGSDR VLKAREQLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLQSG NNSTKGVLLN  240
FEDISGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG PDKQLYIDWK  300
ARNGSNPVVC SVQPVQMVRL FGVNIFKAPG GSGVAEGAGG CNGKRMREME LLSLNCIKKQ  360
RIIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-6319630611121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G098000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592563.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-155RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2C9UJZ40.0A0A2C9UJZ4_MANES; Uncharacterized protein
STRINGcassava4.1_010157m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-152RAV family protein
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]