PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G102500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 243aa    MW: 26879.5 Da    PI: 7.0621
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G102500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.17.5e-304107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +PvyG+vg+++++++
  Manes.14G102500.1.p   4 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLVEAGPSHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                            +q++++++l+++
  Manes.14G102500.1.p  94 IHCQAAVDAVLRGT 107
                          ******99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9733109IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL INLVEAGPSH  60
LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWIHCQAAV DAVLRGTPIM QMPSAPDAPP  120
PHLIDPLKTY DIRHVSKDPN SLELSKVKNR TRFKRPVTNS SSPSESMCRV NHGELSFELH  180
RDPWLSQVAN GDSSRDDESM FSLETVEDVN RGEPNWALKF NGLSDDRDEV DLDLTLGSVP  240
VK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G102500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634824.11e-180LOB domain-containing protein 42
SwissprotQ9CA304e-80LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2C9UKI61e-179A0A2C9UKI6_MANES; Uncharacterized protein
STRINGcassava4.1_014940m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-82LOB domain-containing protein 42