PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G104100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 170aa MW: 19123.8 Da PI: 9.3021

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G104100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	64	111	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq Manes.14G104100.1.p 64 SHSLAERVRREKINEKLRHLQDLVPGC----YKTMGMAVMLDVIIHYVQSLQ 111 8*************************8....344777888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.22E-11	58	115	No hit	No description
SuperFamily	SSF47459	1.23E-16	58	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.939	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	60	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	64	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-8	66	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MNFASNIQGL VPVSPTTPAV PGTGLSENIK SFGGRKRKRK DEKELQKPTD VVHVRAKRGQ 60 ATDSHSLAER VRREKINEKL RHLQDLVPGC YKTMGMAVML DVIIHYVQSL QNQIEFLSMK 120 LSAASMYYDF NLDRDDIETM QGTNAYEVQE MGREGYGLPS NYFQSARPL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	39	RKRKRK
2	34	40	RKRKRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G104100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633839.1	1e-124	transcription factor bHLH75-like
Swissprot	A4D998	1e-52	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A2C9UK55	1e-124	A0A2C9UK55_MANES; Uncharacterized protein
STRING	cassava4.1_025264m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	5e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.14G104100.1.p

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]