PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G108200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 498aa    MW: 55699.2 Da    PI: 5.5847
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G108200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.4e-05235336
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         e++C+ +   +   +C+ ++ +lC +C  + H+ 
  Manes.14G108200.1.p  2 EKICEFCTAFQPVVYCKADGAYLCLSCDAKVHSA 35
                         689******889*****************99954 PP
2zf-B_box16.81.4e-054784539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39
                          C+ + ++++   C d ++++C+ C +++H g    H+ 
  Manes.14G108200.1.p 47 LCDSCRNHPAYARCLDHRMFVCRICDQNIH-GvssqHQK 84
                         7*****************************.66777875 PP
3CCT24.41.1e-09442483243
                  CCT   2 eaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          e+a+ RYk K+ktR  e+kir   +Ka+ +  +RvKGr  k 
  Manes.14G108200.1.p 442 ENAMARYKVKQKTRVQENKIRHGQKKARSDVQKRVKGRIMKT 483
                          689***********************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-4147IPR000315B-box-type zinc finger
PROSITE profilePS501198.688147IPR000315B-box-type zinc finger
CDDcd000211.62E-4435No hitNo description
PROSITE profilePS501199.2144387IPR000315B-box-type zinc finger
CDDcd000211.75E-54776No hitNo description
SMARTSM003360.0494887IPR000315B-box-type zinc finger
PROSITE profilePS510179.465441483IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEKICEFCTA FQPVVYCKAD GAYLCLSCDA KVHSANALSN RHLRTLLCDS CRNHPAYARC  60
LDHRMFVCRI CDQNIHGVSS QHQKRTVSSY LGCPSAKDFA ALWGFELDEL DKSAIQDHLF  120
TASCASVQPS AAVFEIPRPR ESCQTIGSSS RTSKMSGKDQ QQQNNGFILQ QILDLKRLQL  180
TEMGNSSPVV RGREEMDVSS SIFESLDKLD DSVDHFQHPQ VTGNSEYPLQ EIKVDSLPLS  240
FSEPEILPLP STAANPLLGE SFWQCKSPFQ SSQLWSQNMQ DLGVCEDIVS HDDFNIPDVD  300
ITFRNFEELF GTEKDPDPIK ALLDDRDASC SSMDDMSLDT LHDRNARIKE DTSIASSVYT  360
SHPDRVAKDK VSSNQICELP GSLLFSRTIR PSYSAMSFSL SRFGTERSDT EYLDSGLSPH  420
VTGAQFSCHS PDNEGAHSDI QENAMARYKV KQKTRVQENK IRHGQKKARS DVQKRVKGRI  480
MKTEDYDSDT IDVTRSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465476KKARSDVQKRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G108200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634238.10.0putative zinc finger protein At1g68190
RefseqXP_021634239.10.0putative zinc finger protein At1g68190
TrEMBLA0A2C9UKU80.0A0A2C9UKU8_MANES; Uncharacterized protein
STRINGcassava4.1_033171m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF869244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.48e-30CONSTANS-like 9