PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G141800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 700aa    MW: 76960.8 Da    PI: 5.6717
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G141800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.2e-29209262155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Manes.14G141800.1.p 209 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 262
                          79*******************.********************************8 PP
2Response_reg84.33.6e-28221301109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah+++e++ +
  Manes.14G141800.1.p  22 ILAVDDDPICLKVLENLLRKCQY-QVTTTNQAITALKMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDKELVYK 109
                          799********************.***************999889*******************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +eel +
  Manes.14G141800.1.p 110 GVTHGAVDYLLKPVRIEELKN 130
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1691699IPR017053Response regulator B-type, plant
SuperFamilySSF521722.7E-3719146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-4319155No hitNo description
SMARTSM004485.9E-3520132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.35821136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2522130IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.60E-3023136No hitNo description
SuperFamilySSF466894.48E-20206266IPR009057Homeodomain-like
PROSITE profilePS5129412.32206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-31206267IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25209262IPR006447Myb domain, plants
PfamPF002491.2E-7211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MTVEDKRSGS VNEDKFPVGM RILAVDDDPI CLKVLENLLR KCQYQVTTTN QAITALKMLR  60
ENRNKYDLVI SDVNMPDMDG FKLLELVGLE MDLPVIMLSA HSDKELVYKG VTHGAVDYLL  120
KPVRIEELKN IWQHVIRRKK LQPKDQNRSP NQADKSLDGA GEGGQGVSSS SSADQNGKVN  180
RKRKDQDEED EEEGEENLHD NEEPGTQKKP RVVWSVELHR KFVAAVNQLG LDKAVPKKIL  240
DLMNVEGLTR ENVASHLQKY RLYLKRISSV ASQQANMVAA FGGKDSSYLR MGSLDGFGDF  300
RTLSGPGRLS STSISSYPAG GMLGRLNSPA GLTLRGIASS GLLQSGHSQT LNTSANTLGK  360
LHQPALLPAS QGTNLFQGVP LSVEPNQLQG KSSTLIGDFN RSDDAAGFTL ATSFSDARTT  420
VGSLNNTVST PTSNPLMLQV NPQQSQNRGA FATQSSLSVP PLYQESFDVG VHGTSNFLDH  480
SRCTENWQGA VQLSKFQTNS LPLSEPFSHD PLSNSNLRDN ISSTSSQIGN SPNDFSSSNM  540
LATPLDSRVD MQGQTDLIGN VVQNLNFNSR QRWEDHSQDY NPNLINSFGN ANSMVSSNGV  600
VVSWNQGVEQ RKKFDMPLAG QLNNVTPSIF QHAEVEKSAL DPKMRPNENY LLEQTKSQNG  660
FAQNNYDSLD DIMNAMIKRQ EQNESMLMDG EFGFDAYYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24207268364ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G141800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634582.10.0two-component response regulator ARR12-like isoform X1
TrEMBLA0A2C9UMT80.0A0A2C9UMT8_MANES; Uncharacterized protein
STRINGcassava4.1_002953m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-130response regulator 12