PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G172000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18200.8 Da    PI: 8.0374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G172000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-152977149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+i++k    vtfskRr+g++KK  E++ LC+ e+avi fs+ gk y +
  Manes.14G172000.1.p 29 KKIQDKCSLLVTFSKRRTGLFKKLGEVCNLCGGEAAVITFSPAGKPYAF 77
                         6799999999**********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.1242181IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-212180IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-202293IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-152343IPR002100Transcription factor, MADS-box
PfamPF003191.3E-173077IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-154358IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-155879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
METTVADSNA TPEQSRRRAG TGRRRVEIKK IQDKCSLLVT FSKRRTGLFK KLGEVCNLCG  60
GEAAVITFSP AGKPYAFGAP SADSVALRYL TESISAASSS GLDLPEAAAV EEAEEKFWWE  120
QPIEELDMEE LREYKAGLVG LKSNLVMRIE DLKMRKTVTR NLFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G172000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634098.11e-118agamous-like MADS-box protein AGL61
TrEMBLA0A2C9UM511e-117A0A2C9UM51_MANES; Uncharacterized protein
STRINGcassava4.1_028156m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-24AGAMOUS-like 61