PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G006800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 157aa    MW: 16921 Da    PI: 9.9928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-054971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C++ F+++  L  H++ H
  Manes.15G006800.1.p 49 FECQYCHREFPNSQALGGHQNAH 71
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-64776No hitNo description
PfamPF139127.4E-74873IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSASRRRNTH LEENPCSALK LFGFSLKVTG SKESSVTVTG PSNGYRRRFE CQYCHREFPN  60
SQALGGHQNA HKRERLREKQ ARLANHRQQP ITAVPVITST SMGSGPFICA KAPPFSEPNP  120
GGPPHGVSTG GSGPFVAEVN GGDDNVDLHL RLALYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G006800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637068.18e-89zinc finger protein 5-like
TrEMBLA0A2C9UDL41e-111A0A2C9UDL4_MANES; Uncharacterized protein
STRINGcassava4.1_032175m1e-112(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.17e-14C2H2 family protein