PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G013700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YB

Protein Properties

Length: 159aa MW: 17783.9 Da PI: 5.8737

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G013700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.1	2.6e-53	17	113	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 v+eq+r+lPianv+rimkk+lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++wa++ lGf++y+ pl+ yl++y Manes.15G013700.1.p 17 VKEQERLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTSEASEKCKKERRKTVNGDDVCWAMGALGFDEYAGPLTGYLQRY 106 589************************************************************************************* PP NF-YB 91 relegek 97 releg++ Manes.15G013700.1.p 107 RELEGDR 113 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-53	13	137	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-39	20	129	IPR009072	Histone-fold
Pfam	PF00808	5.8E-28	23	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.7E-16	51	69	No hit	No description
PROSITE pattern	PS00685	0	54	70	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	6.7E-16	70	88	No hit	No description
PRINTS	PR00615	6.7E-16	89	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDDNTGAASA STEDGGVKEQ ERLLPIANVG RIMKKILPPN AKISKEAKET MQECVSEFIS 60 FVTSEASEKC KKERRKTVNG DDVCWAMGAL GFDEYAGPLT GYLQRYRELE GDRSANQEKA 120 NTEEKEDSSS YRNHFNQRNH QDVVVPPPPL LKFDKKRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-42	17	108	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-42	17	108	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G013700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595838.1	1e-116	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	2e-53	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2C9UD03	1e-115	A0A2C9UD03_MANES; Uncharacterized protein
STRING	cassava4.1_026290m	1e-116	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	8e-56	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Manes.15G013700.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]