PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G049400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 265aa    MW: 29578.4 Da    PI: 7.4371
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G049400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19185219135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.15G049400.1.p 185 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 219
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.04E-15178241No hitNo description
SMARTSM004011.0E-15179229IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374179215IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.5E-15183217IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-15184233No hitNo description
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
PfamPF003203.8E-17185219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESLDPAACF MDDLLDFASD IGEEDDDEDH NKPRKALPPL NPPPNGLAVA PPPFDVFDPS  60
DDSTRPLPEF AEEDLEWLSN KDAFPALETF VDILSENPGS LPKQRSPVSV LENSTTSSTS  120
NSGNSSTNES VIMNYCRSLQ VPVRARSKHH RRRRRDLQAQ QCWWSLENLR KVRPSVTSST  180
MGRKCQHCGA EKTPQWRAGP LGPKTLCNAC GVRYKSGRLV PEYRPASSPT FSVELHSNSH  240
RKVMEMRKQK QMMGLMVVKP MEKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G049400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595256.10.0GATA transcription factor 1-like
SwissprotQ8LAU94e-56GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2C9UD000.0A0A2C9UD00_MANES; Uncharacterized protein
STRINGcassava4.1_014105m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-52GATA transcription factor 1