PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G053900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 437aa    MW: 48396.3 Da    PI: 5.8681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G053900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19259307355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Manes.15G053900.1.p 259 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRG 307
                          8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-31257317No hitNo description
PROSITE profilePS5103222.418258315IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22258316IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-31258316IPR001471AP2/ERF domain
SMARTSM003802.4E-35258321IPR001471AP2/ERF domain
PRINTSPR003671.1E-10259270IPR001471AP2/ERF domain
PfamPF008474.9E-13259307IPR001471AP2/ERF domain
PRINTSPR003671.1E-10281297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEDQFPKMET FMHKDYSFHG MATASKYFDD PIIWGAPTEA ATCGDNGTSG LKSTASSPER  60
FLSSSDSCSS AEEASGTICN IPGFVKPDVT KQNHASSFLS GLSSINPSSG ASLSDIKESS  120
IPVDFLESFP KINQTHQVSE PSSPSKFPNL TLFLQEPSLL DPSKQPITCS LLSENQRLEP  180
MLLFPNTSFS MPQLEKIHCS PSEEWLKINQ TLTDYPTKGF NDYWLSTTKT QPMKCTGRRL  240
QNQQQKSSLS STSAPGKLFR GVRQRHWGKW VAEIRLPRNR TRVWLGTFDT AEEAAIAYDT  300
AAYMLRGDYA HLNFPDLKHQ LKANSSNGAT AALLEAKLQA ISQGITGQKK QNIDPPLTSP  360
NKHVYENNTK LKGLGQNPSR KEWQFQLESE VGFDGEMNEN KKAQEAVESE MDGVQLSRMP  420
SLDMDMIWDA LLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21254325168ATERF1
3gcc_A6e-21254325168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G053900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595908.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2C9UDB90.0A0A2C9UDB9_MANES; Uncharacterized protein
STRINGcassava4.1_023072m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-75ERF family protein