PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G063600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 580aa    MW: 62997.3 Da    PI: 6.9757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32222279260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Manes.15G063600.1.p 222 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 279
                          8****************************************.***************85 PP
2WRKY106.21.7e-33386444159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Manes.15G063600.1.p 386 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 444
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-27220280IPR003657WRKY domain
SuperFamilySSF1182901.29E-24221280IPR003657WRKY domain
SMARTSM007744.1E-34221279IPR003657WRKY domain
PfamPF031061.7E-24222278IPR003657WRKY domain
PROSITE profilePS5081122.791222280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37371446IPR003657WRKY domain
SuperFamilySSF1182902.35E-29378446IPR003657WRKY domain
PROSITE profilePS5081138.825381446IPR003657WRKY domain
SMARTSM007743.1E-39386445IPR003657WRKY domain
PfamPF031063.5E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDNTSNESEL RLCGASDPGD PTLRESDAAG AASSGGARYK LMSPAKLPIS RSPCITIPPG  60
LSPTSFLESP VLLSNVKAEP SPTTGSFTNT QTGHGFLGSN SYSVMAPSNA YGERKSSCFE  120
CRPHTRSNLV PADVNHQRTE QSVQVQGQYY SQSHASSPTV KSEEVPLNEL SLSAPPPMVT  180
SGSSAPTEVD SEELNQMGAS NSGLQVSQSD HKGGSGLSMS SDDGYNWRKY GQKHVKGSEF  240
PRSYYKCTHP NCEVKKLFER SHDGQITEII YKGTHDHPKP QPSRRYTAGA VLLMQEDRSD  300
KISLHGRDDK SPSAYGQVSN TIEPNGTPEL SPLTPNDDGT EGAEDDYDPF SKRRKMDTGG  360
FDVTPVIKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR  420
KHVERASHDP KAVITTYEGK HNHDVPTARS SSHDTARSSS HDTAGPTPVN GQSRIRSDES  480
DTISLDLGVG ICSTAENRSN DQQQAMHSEF TQNRNQTSGS SFRIAPRTPI TPYYGVLNGG  540
MHQFGSRQNP NEGHSVEIPP LSHSSCPYPQ NMGRLVMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36213446477Probable WRKY transcription factor 4
2lex_A2e-36213446477Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276070.0KT827607.1 Manihot esculenta WRKY transcription factor 32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595661.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A140H8N60.0A0A140H8N6_MANES; WRKY transcription factor 32
STRINGcassava4.1_004372m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-180WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]