PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G067100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 173aa    MW: 18963.4 Da    PI: 6.4034
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G067100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-07434535
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ +e+  ++ fC  ++  lC+ C ++ Hk
  Manes.15G067100.1.p  4 LCDACESAAAIVFCAADEAALCHACDEKVHK 34
                         7***************************995 PP
2zf-B_box30.85.9e-105291237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  Manes.15G067100.1.p 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDVTVHVGgkrtH 91
                         6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
SMARTSM003368.9E-8147IPR000315B-box-type zinc finger
CDDcd000214.92E-6345No hitNo description
PfamPF006432.7E-6343IPR000315B-box-type zinc finger
SuperFamilySSF578457.88E-54886No hitNo description
SMARTSM003365.9E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006432.6E-85291IPR000315B-box-type zinc finger
CDDcd000217.34E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCHACDE KVHKCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD VTVHVGGKRT HGRYLLFRQQ VEFPKDAAEP STSHAIIMNQ  120
DENKKGQNQQ NHVTPSEAKS DGHARMENKM IDLNMKPTAV RVHEQAPNDQ VD*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G067100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593727.11e-126B-box zinc finger protein 19-like
SwissprotC0SVM54e-70BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2C9UDG71e-125A0A2C9UDG7_MANES; Uncharacterized protein
STRINGcassava4.1_017602m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-72DBB family protein