PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G068800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 570aa    MW: 61910.7 Da    PI: 6.712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G068800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30333391259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r++ed+ v+++tYeg+Hnh+
  Manes.15G068800.1.p 333 SDGCQWRKYGQKVAKGNPCPRAYYRCTMAaGCTVRKQVQRCSEDQAVLITTYEGHHNHP 391
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-33317391IPR003657WRKY domain
SuperFamilySSF1182906.67E-27325392IPR003657WRKY domain
PROSITE profilePS5081129.287327393IPR003657WRKY domain
SMARTSM007743.8E-36332392IPR003657WRKY domain
PfamPF031065.1E-26334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDKPLGLSFG TDPTSSLIIS QPPGINTAWK HDIIIMDPSN DRPLNHCSGD EYRSISNGKR  60
VITEMDFFAV GSCPKQKACI IKKECIDERV EQQNEDDVNI GLNLLTGNSG SCNKSMVEDG  120
TSQTKEVYDQ RKKELELLQA EIDHMNEENQ LLKGILNQVN RNYYALQMHV VALKQRQQIH  180
KATTVKNEEV INGNLEEKQR KGSIFARQFL DLGKAERAEM GEGRSQSTSE ERNRDCAVSP  240
NIVESMEHNK SQMISNSSIS GVFPVLDPLR RSGDGEISDH KTSEEAFHGW VPNKVPKINT  300
SRDVDDEQKE ETMSMIRKAR VAVRARSEAS MISDGCQWRK YGQKVAKGNP CPRAYYRCTM  360
AAGCTVRKQV QRCSEDQAVL ITTYEGHHNH PLSPAAMAMA STTSAAASML LSGSMPSPDG  420
LMNTNLLAKT LACPPGFATI SASAPFPTVT LDLTHSPISS SSQSPQGHLL LPSLNFPHNF  480
ASALNVSAGA LHNQYKVSGL LSPHQGMELP QILPLMADTS VSAATAALTA DPNFTAALVA  540
AISSIIGNVQ ASSNANNSST IRNSIDNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21322392776Probable WRKY transcription factor 4
2lex_A2e-21322392776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G068800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276080.0KT827608.1 Manihot esculenta WRKY transcription factor 33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594193.10.0probable WRKY transcription factor 31
TrEMBLA0A2C9UEL80.0A0A2C9UEL8_MANES; Uncharacterized protein
STRINGcassava4.1_021542m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-77WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]