PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G070500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 160aa    MW: 16866.9 Da    PI: 8.5211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G070500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.87.1e-2065112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd +l+++v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Manes.15G070500.1.p  65 KGPWTAEEDAILAEYVRKHGEGNWNAVQRHSGLSRCGKSCRLRWANHL 112
                          79******************************************9996 PP
2Myb_DNA-binding25.23.9e-08118146130
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                          +g++++eE+ l+v++++++G++ W++ a  
  Manes.15G070500.1.p 118 KGAFSPEEERLIVELHAKFGNK-WARMATL 146
                          799*******************.***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.28260116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2561115IPR009057Homeodomain-like
SMARTSM007171.0E-1664114IPR001005SANT/Myb domain
PfamPF002497.6E-1865112IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-2666142IPR009057Homeodomain-like
CDDcd001675.02E-1467112No hitNo description
Gene3DG3DSA:1.10.10.603.2E-13116147IPR009057Homeodomain-like
PROSITE profilePS512948.329117159IPR017930Myb domain
SMARTSM007170.76117159IPR001005SANT/Myb domain
PfamPF002495.0E-7118147IPR001005SANT/Myb domain
CDDcd001677.96E-4120147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MISTINGGSE GAGFSGSIGG GVDVAAAAAI HQGGGDMHAN VHHGVNGTGS CSGGNDGNGE  60
THLKKGPWTA EEDAILAEYV RKHGEGNWNA VQRHSGLSRC GKSCRLRWAN HLRPNLKKGA  120
FSPEEERLIV ELHAKFGNKW ARMATLVSIY GFNFTLFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2263148589B-MYB
1h8a_C9e-226314825109MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G070500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594422.11e-103transcription factor MYB120-like
SwissprotO808832e-48MB101_ARATH; Transcription factor MYB101
TrEMBLA0A2C9UFM91e-112A0A2C9UFM9_MANES; Uncharacterized protein
STRINGcassava4.1_027117m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.18e-50myb domain protein 101
Publications ? help Back to Top
  1. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]
  2. Xue T,Liu Z,Dai X,Xiang F
    Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
    Plant Sci., 2017. 262: p. 182-189
    [PMID:28716415]