PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G078300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 535aa    MW: 59598.3 Da    PI: 5.7069
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G078300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.41.9e-1291645331373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+++++ +  ++l+ + +  +s  g+p+qRl ay++e+L ar   s++++y+al+++e +   s + l+++++++e++P+
  Manes.15G078300.2.p 164 LKQLLIACAKALAENNINDFDKLIGKARIAVSIGGEPIQRLGAYLVEGLVARKELSGNNIYRALRCREPE---SNDLLSYMRILYEICPY 250
                          689***************************************************9**************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea +++er+HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p ++  + + le++++rLa + e++++p+ef
  Manes.15G078300.2.p 251 LKFGYMAANGAIAEACKNDERIHIIDFQIAQGTQWITLLQALAAKPDGAPHVRITGIDDPVNKhaRGDGLEAVHRRLAAISEKFNIPIEF 340
                          ***********************************************************99988999*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     d+++++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f
  Manes.15G078300.2.p 341 HG-VPVFAPDVTPDMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPKVVTLVEQESNTNTTPFLTRFIETLDYYLAMF 429
                          **.688899********************************************************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+++eri vE+++l+++ivnv+aceg+er+erhe ++kW++rl +aGF+++pls+++++ +++llr ++ + y++ e++g++
  Manes.15G078300.2.p 430 ESIDVTLPRDQKERIGVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRLIMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAM 518
                          *************************************************************************9999.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+L+s+SaW
  Manes.15G078300.2.p 519 LLGWKNRNLISASAW 533
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.822138515IPR005202Transcription factor GRAS
PfamPF035146.4E-127164533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MESHQLFGYS VTGNSPSSPF SNHFDCDTIT TLSDSREQYS TTDNLSGASP SCNSSLESGN  60
HFHQLSPTLL QDANSSQNVK YTLLQLETAL MAPDDEDITM SDTSLGESSR PQTSGQTTRA  120
WSQDHHGSCV IQPRQRQSDE GALIEEHQKQ MEEAKFQSIP PGNLKQLLIA CAKALAENNI  180
NDFDKLIGKA RIAVSIGGEP IQRLGAYLVE GLVARKELSG NNIYRALRCR EPESNDLLSY  240
MRILYEICPY LKFGYMAANG AIAEACKNDE RIHIIDFQIA QGTQWITLLQ ALAAKPDGAP  300
HVRITGIDDP VNKHARGDGL EAVHRRLAAI SEKFNIPIEF HGVPVFAPDV TPDMLDIRPG  360
EALAVNFPLQ LHHTPDESVD VSNPRDGLLR MVKSLNPKVV TLVEQESNTN TTPFLTRFIE  420
TLDYYLAMFE SIDVTLPRDQ KERIGVEQHC LAKDIVNVIA CEGKERVERH ELFGKWKSRL  480
IMAGFRQYPL SSYVNSVIRS LLRCYSEHYT LVEKDGAMLL GWKNRNLISA SAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-601665346375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G078300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595372.10.0chitin-inducible gibberellin-responsive protein 1-like isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A251J3V50.0A0A251J3V5_MANES; Uncharacterized protein
STRINGcassava4.1_004650m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]