PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G078800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 231aa MW: 26077.8 Da PI: 6.5126

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G078800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	252	2.3e-77	6	229	150	373
GRAS 150 pesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 p ++ + + le++++rLa + e++++p+ef+ v +d+++++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pk Manes.15G078800.1.p 6 PVNKhaRGDGLEAVHRRLAAISEKFNIPIEFHG-VPVFASDVTPDMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPK 94 5444458899*********************.68899*********************************************** PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 v++veqe+++++++Fl+rf+e+l+yy a+f+s++++lpr++++ri vE+++l+++ivnv++ceg+er+erhe ++kW++rl +aGF+++ Manes.15G078800.1.p 95 AVTLVEQESNTSTTPFLTRFIETLDYYLAMFESIDVTLPRDQKDRIGVEQHCLAKDIVNVISCEGKERVERHELFGKWKSRLIMAGFRQY 184 ************************************************************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW Manes.15G078800.1.p 185 PLSSYVNSVIRSLLRCYS-EHYTLVEKDGAMLLGWKNRNLISASAW 229 **********9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.94	1	211	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-75	6	229	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGIDDPVNKH ARGDGLEAVH RRLAAISEKF NIPIEFHGVP VFASDVTPDM LDIRPGEALA 60 VNFPLQLHHT PDESVDVSNP RDGLLRMVKS LNPKAVTLVE QESNTSTTPF LTRFIETLDY 120 YLAMFESIDV TLPRDQKDRI GVEQHCLAKD IVNVISCEGK ERVERHELFG KWKSRLIMAG 180 FRQYPLSSYV NSVIRSLLRC YSEHYTLVEK DGAMLLGWKN RNLISASAWN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-30	14	230	170	379	Protein SCARECROW
5b3h_A	7e-30	14	230	169	378	Protein SCARECROW
5b3h_D	7e-30	14	230	169	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G078800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594475.1	1e-172	chitin-inducible gibberellin-responsive protein 1-like, partial
Swissprot	Q69VG1	1e-124	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2C9UF16	1e-171	A0A2C9UF16_MANES; Uncharacterized protein
STRING	cassava4.1_009548m	1e-166	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF38800	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-102	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.15G078800.1.p

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]