PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G090000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 187aa    MW: 21091 Da    PI: 8.2379
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G090000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181871356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +R+++t++q++ Le+ F  n+++  e +  LA++lg++ rqV +W+qN+Ra++k
  Manes.15G090000.1.p 18 SRRRLTQDQVRLLERTFIANKKLEPELKLALANQLGVPPRQVAIWYQNKRARWK 71
                         699**************************************************9 PP
2HD-ZIP_I/II106.42.2e-3419109393
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          +rrl+++qv+lLE++F +++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++++ ++++  +e++rLekev +Lr+el+
  Manes.15G090000.1.p  19 RRRLTQDQVRLLERTFIANKKLEPELKLALANQLGVPPRQVAIWYQNKRARWKTQSLELDYNTVQVKLENALAEKKRLEKEVMQLRDELS 108
                          79*************************************************************************************998 PP

          HD-ZIP_I/II  93 e 93 
                          +
  Manes.15G090000.1.p 109 K 109
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451373IPR001356Homeobox domain
SuperFamilySSF466891.07E-171481IPR009057Homeodomain-like
SMARTSM003894.4E-151577IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-181880IPR009057Homeodomain-like
PfamPF000466.3E-161871IPR001356Homeobox domain
CDDcd000867.79E-151974No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDFFHSQAQH KHPPKNGSRR RLTQDQVRLL ERTFIANKKL EPELKLALAN QLGVPPRQVA  60
IWYQNKRARW KTQSLELDYN TVQVKLENAL AEKKRLEKEV MQLRDELSKA REMMFACNQG  120
IIPSHPSHHF HPLLPPQPPL NVSCNSSCDD GGGGSSLHED INGEVLQFDE LYACLISPGC  180
GGSTWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G090000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595809.11e-138homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2C9UEG81e-137A0A2C9UEG8_MANES; Uncharacterized protein
STRINGcassava4.1_030094m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-30homeobox protein 52