PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G103200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 229aa    MW: 24012 Da    PI: 8.7013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G103200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-103358227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt+lC+ +     Ck+Gd+C+FaHg+
  Manes.15G103200.2.p 33 KTRLCNKYNTAEGCKFGDKCHFAHGE 58
                         9***********************96 PP
2zf-CCCH382.8e-12195219126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +GdrC+FaHg
  Manes.15G103200.2.p 195 FKTKLCENFAK-GSCTFGDRCHFAHG 219
                          69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-142963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-83062IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-43158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5913159IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-73358IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-1594174IPR004088K Homology domain, type 1
SMARTSM003224.4E-12101171IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.6E-16102173IPR004088K Homology domain, type 1
PROSITE profilePS5008413.858102166IPR004088K Homology domain, type 1
PfamPF000133.2E-11104168IPR004088K Homology domain, type 1
CDDcd001052.76E-14104166No hitNo description
Gene3DG3DSA:4.10.1000.109.4E-17193226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-9194224IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7194220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.197194221IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-10195219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLNLGGNPSL PPASRNAGVP PSFPDGSSPP ALKTRLCNKY NTAEGCKFGD KCHFAHGEWE  60
LGKPTGPSYE DPRSIGPISG RMGRQMEPPH QGFGAASSFG ASATAKISIN ASLAGAIIGK  120
NGVNSKQICR LTGAKLSIRD HETDPNLRNI ELEGTFDQID QASAMVRELI GNVSQGSGPP  180
IKNAAIHSSG PANNFKTKLC ENFAKGSCTF GDRCHFAHGT EELRKPGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G103200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595043.11e-167zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9UFM31e-167A0A2C9UFM3_MANES; Uncharacterized protein
STRINGcassava4.1_012715m1e-166(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-56C3H family protein