PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G103300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 148aa    MW: 15975.7 Da    PI: 9.6548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G103300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-1998135136
                 GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                          C+  nC+tt+Tp+WR+gp g+ktLCnaCG++yrk+g+k
  Manes.15G103300.1.p  98 CTnnNCNTTDTPMWRKGPLGPKTLCNACGIKYRKEGEK 135
                          55559******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-1594146IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-1395139No hitNo description
PfamPF003203.4E-1798135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-14101136IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.991102136IPR000679Zinc finger, GATA-type
CDDcd002021.50E-8109134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTNVGGSSNP NGGQNFINAN QEVAWPEQEA EMRDLNSSLV DPAFNPMPGL SFMNSNTVLD  60
SSSRKVKDDG DESGNSSAGK QVSRRQRYGS FVEPNKRCTN NNCNTTDTPM WRKGPLGPKT  120
LCNACGIKYR KEGEKKRAKA AAKNSNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G103300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595107.12e-82uncharacterized protein LOC110601984
TrEMBLA0A2C9UEW71e-104A0A2C9UEW7_MANES; Uncharacterized protein
STRINGcassava4.1_023256m1e-104(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-08GATA transcription factor 29