PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G108200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 332aa    MW: 36507.6 Da    PI: 7.2619
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G108200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEdellv+++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Manes.15G108200.1.p 29 RGPWTPEEDELLVNYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 76
                         89******************************99************97 PP
2Myb_DNA-binding46.96.3e-1587127648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Manes.15G108200.1.p  87 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127
                          89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-222078IPR009057Homeodomain-like
PROSITE profilePS5129418.0062476IPR017930Myb domain
SuperFamilySSF466891.65E-2926123IPR009057Homeodomain-like
SMARTSM007172.2E-142878IPR001005SANT/Myb domain
PfamPF002493.3E-162976IPR001005SANT/Myb domain
CDDcd001672.11E-123176No hitNo description
PROSITE profilePS5129423.02777131IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2379132IPR009057Homeodomain-like
SMARTSM007172.7E-1381129IPR001005SANT/Myb domain
CDDcd001671.12E-1187127No hitNo description
PfamPF002491.0E-1387127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRNPSPSASA GEGPQPAKTP CCSKVGLKRG PWTPEEDELL VNYIKKEGEG RWRTLPKRAG  60
LLRCGKSCRL RWMNYLRPCV KRGQIAPDEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK  120
NYWNTHLSKK LISQGIDPRT HKPLNLESFD HQKASSSKAN RKTSGLMSNN NNSTVAAPSS  180
GVEETNSGGS TQIISNKENV CIENTSLDHH YQLTGNNNAD PSHGYSSLLN CGNGTCGMHL  240
ISNAQGLSNE EDEDINYGTD DVFSSFLNSL INEEAFTSQQ MQQEGNLIVA SSDPLLSTST  300
STFGYGPSWE SVLMSPTNQN DPSKRVNDHL H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25271315108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G108200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594698.10.0transcription repressor MYB5-like
SwissprotQ388503e-81MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2C9UER50.0A0A2C9UER5_MANES; Uncharacterized protein
STRINGcassava4.1_011594m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-83myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]