PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G119000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 240aa    MW: 26692.5 Da    PI: 5.3559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G119000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131892251354
                          HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R+++++    Lr ++P         ++ +++L +Av+Y+ksL
  Manes.15G119000.1.p 189 RQKMKKMVKALRGIVPGG-----DEMNTVTVLDEAVRYLKSL 225
                          799*************94.....59***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.55176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5183231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-6186230No hitNo description
SuperFamilySSF474591.96E-8187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-8187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQSDQQFQPR KAVPHFANQR GNNYMHISAA PSNAAALHPA AKHLMPVHGI EFQPSEVCPK  60
NFIIFDQNDH RSQIMFHPDV AHKFSGPGLN VYTGYVQENF DNEAVNDIER DISASLKEDS  120
DDIDVLLSLE EEEQDEYDDE EVSTARTYGN QGSNSPDSYS TYGYEPRKNG SSIQKSSGSF  180
SSCNSERKRQ KMKKMVKALR GIVPGGDEMN TVTVLDEAVR YLKSLKVEVQ KLGVGTSKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G119000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8399630.0FJ839963.1 Hevea brasiliensis bHLH1 transcription factor mRNA, complete cds.
GenBankKC8227610.0KC822761.1 Hevea brasiliensis HLH transcription factor (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594459.11e-180transcription factor bHLH144-like
RefseqXP_021594460.11e-180transcription factor bHLH144-like
RefseqXP_021594461.11e-180transcription factor bHLH144-like
RefseqXP_021594462.11e-180transcription factor bHLH144-like
RefseqXP_021594463.11e-180transcription factor bHLH144-like
SwissprotQ9ASX93e-46BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A2C9UG971e-179A0A2C9UG97_MANES; Uncharacterized protein
STRINGcassava4.1_027069m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114111113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.23e-42bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]