PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G122300.4.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 347aa MW: 37808.7 Da PI: 7.2126

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G122300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+Fs++ L H+r+H Manes.15G122300.4.p 19 HSCFYCKKVFSNHQALGGHLRVH 41 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.59E-5	17	44	No hit	No description
PROSITE profile	PS50157	11.24	19	46	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-4	19	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MCSLLVTGKK KAKKHADAHS CFYCKKVFSN HQALGGHLRV HQGEIKSKKG LNSSGFSSNS 60 IEIMGTHLNP LTNLQPENSS EARKSLPFFD KEASQFSFYK SCCLHENSLV NTSKFTSNNL 120 ANGKYNLIMS PNLPTTGGSA EIYHPSCLIM AAIPSIRNGT TSSNTFASPL TIGFPSESSF 180 CSGTGEVSRF NSDEFLTWRD AMPFISENAL QNLECYDLSK FPYPAFAVMN TFPGVGSNQF 240 PGFGFGIFPW GPCQCLGRKI VGQCDGIDAL YCEGNKEPYM SDVPGDAPAT NTSKRLKPTF 300 SSLVQTEKPQ KELLFFRDLE HSSSGLGVPS DAKEEVQVDL DLTLHL*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MCSLLVTGKK KAKKHADAHS CFYCKKVFSN HQALGGHLRV HQGEIKSKKG LNSSGFSSNS  60
IEIMGTHLNP LTNLQPENSS EARKSLPFFD KEASQFSFYK SCCLHENSLV NTSKFTSNNL  120
ANGKYNLIMS PNLPTTGGSA EIYHPSCLIM AAIPSIRNGT TSSNTFASPL TIGFPSESSF  180
CSGTGEVSRF NSDEFLTWRD AMPFISENAL QNLECYDLSK FPYPAFAVMN TFPGVGSNQF  240
PGFGFGIFPW GPCQCLGRKI VGQCDGIDAL YCEGNKEPYM SDVPGDAPAT NTSKRLKPTF  300
SSLVQTEKPQ KELLFFRDLE HSSSGLGVPS DAKEEVQVDL DLTLHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G122300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595783.1	0.0	uncharacterized protein LOC110602548
Refseq	XP_021595784.1	0.0	uncharacterized protein LOC110602548
Refseq	XP_021595785.1	0.0	uncharacterized protein LOC110602548
Refseq	XP_021595786.1	0.0	uncharacterized protein LOC110602548
Refseq	XP_021595787.1	0.0	uncharacterized protein LOC110602548
TrEMBL	A0A251J5G6	0.0	A0A251J5G6_MANES; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Manes.15G122300.4.p