PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G125200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 898aa    MW: 99110.4 Da    PI: 6.5732
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G125200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Manes.15G125200.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Manes.15G125200.1.p 215 --WNEKNQLLLGIRRA 228
                          ..8899999****997 PP
2Auxin_resp121.75.6e-40253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Manes.15G125200.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21126227No hitNo description
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24127229IPR003340B3 DNA binding domain
PfamPF023623.5E-22127228IPR003340B3 DNA binding domain
PfamPF065077.9E-35253336IPR010525Auxin response factor
SuperFamilySSF542771.83E-7756839No hitNo description
PROSITE profilePS5174524.401764848IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MRLSSAGFNP QTQEGEKRVL NSELWHACAG PLVSLPAVGN RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPPFPL RLKRPWPPGL PTFHGIKDDD LGMNSPLMWL RGDGDRGIQS MNFQGIGVTP  420
WLQPRVDASM LGLQTDMYQA MAAAALQEMR AIDPSKPSTA SIVQFQQQPN FPSRTGSLMP  480
PQMLQQSQPH TAFLQGVQEN QHQPQSQSQT QSHLIQQQLH HQHTFNSQQQ QQLPQQQLVE  540
HQQMSNVVSA ISQFASASQS QSPPLQAISS LCQQQSFSDS NGNPVTSSVV SPLHSLMGSF  600
SQDESSHLLN LPRTNALVTS SGWPSKRAAV EPLISAGAPQ CVLPQVEQFG AHQTNISQNA  660
VSLPPFPGRD CSIDQDSGTD PQSHLLFGVN IEPSSLILQS GMSSLRGVGS DSDSTTVPFS  720
SSNYMSTTGT DFSLNPAMTP SSCIDESGFL QSPENVGQVN SSTKTFVKVH KSGSFGRSLD  780
ISKFSSYNEL RSELARMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP WPEFVNSVWC  840
IKILSPQEVQ QMGKRGLELL NSVPIQRLSN GSCDDYASRQ DSRNLSSGIT SVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G125200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595218.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2C9UGD00.0A0A2C9UGD0_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]