PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G135000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 657aa    MW: 70696.9 Da    PI: 6.3952
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G135000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.52.9e-28224277155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Manes.15G135000.1.p 224 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 277
                          79*******************.********************************8 PP
2Response_reg77.25.9e-26401481109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++l+q+l++  y +v+++++++ al+ll+ek+  +D++l D+ mp+mdG++ll++   e  +lp+i+++a    + + +
  Manes.15G135000.1.p  40 VLVVDDDTTCLRILEQMLRRCLY-HVTSCSEAKVALDLLREKKgcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADRRTSAVMK 127
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ +eel +
  Manes.15G135000.1.p 128 GIRHGACDYLIKPIREEELKN 148
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.84E-3537164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.1E-4237178No hitNo description
SMARTSM004481.6E-2938150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.97339154IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-2641153No hitNo description
SuperFamilySSF466891.36E-19221281IPR009057Homeodomain-like
PROSITE profilePS5129411.209221280IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-30221282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24224277IPR006447Myb domain, plants
PfamPF002499.4E-7226275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAALQRAASI VSATASNYGY CKVAAADGVV SDQFPAGLRV LVVDDDTTCL RILEQMLRRC  60
LYHVTSCSEA KVALDLLREK KGCFDVVLSD VHMPDMDGFK LLEHVGLEMD LPVIMMSADR  120
RTSAVMKGIR HGACDYLIKP IREEELKNIW QHVVRKKWHE NKDLEPSGSL EDNDRNKQVN  180
DDAEYASSVN EGTEGVLKGQ KKRSSSKDED DGEPENDDPS TSKKPRVVWS VELHQQFVSA  240
VNQLGIDKAV PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGVAQHGG IPNTFCGPLD  300
PNINLNSLGR FDIQALAASG QIPPQTLAAL HAELLGRPAG SLVTTMDQPA LLQASMQGPK  360
CIPVEHGVAF GQPLVKCQSN ISKPFRQNMT PVEEVASKFG AWPSNSLGMV GPNTNLGGVG  420
TQNGNMLMDM LHQQQPQQQS LSEASLSINV QPSCLVVPSQ SSASFQAGNS PSSVNQSCNF  480
NRNAVIDYSL LLSQSSLNIG HAPIGNQKTT GVVSGYSVSA SISPSASSCS VNADSGINRQ  540
VQNSTITSGA DRHLPGLASN ISDVQGTYGA KSGEVLDQGP LRYLGCVGKG TILPSQFTVD  600
EFTVPISNLS RGKIFGDNNG SKVKQEPNME FTDNARVGVS VLQQFPPSDL MSVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-23220283164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G135000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594476.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_021594477.10.0two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-164ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-164ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2C9UFG30.0A0A2C9UFG3_MANES; Two-component response regulator
STRINGcassava4.1_003234m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-123response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]