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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.15G139000.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 30939.5 Da PI: 10.2418 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.15G139000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 346.6 | 5.7e-106 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalver 77
mddd+ + rn+gyyep+ +k +lglqlmss+a+rd+k r+ n + + ++a+++rd m++ rd ++++
Manes.15G139000.1.p 1 MDDDALNMRNWGYYEPT--FKGHLGLQLMSSMADRDTKHflpgRDPNNIMVGANGAFHPRDcvvsdasvpMHY-VRDGWISQ-------- 79
9***9999*******99..************************999999************999999999999.89999999........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
++k+l++l+ + ++ vl++++ ++s+q l+++ r+e ++ iee ++++ke ++ kkrq + pk++kakk+
Manes.15G139000.1.p 80 REKFLNMLPPNP--------NYAVLPEASGAHSMQV-----LQPPNSS-RDE---KVGRIEE-PTVNKEGNQLKKRQGGGAPKTPKAKKP 151
789*****9555........4899**********99.....5554444.222...2334433.555666677777888888888888888 PP
GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257
+k +k++++++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiag
Manes.15G139000.1.p 152 RK----PKDSSNNAV--QRAKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAG 235
88....223334344..6899********************************************************************* PP
GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
rKmSqgafkk+LekLaaeGy++ np+DL++hWAkHGtnkfvtir
Manes.15G139000.1.p 236 RKMSQGAFKKVLEKLAAEGYNFVNPIDLRTHWAKHGTNKFVTIR 279
*******************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPTFKG HLGLQLMSSM ADRDTKHFLP GRDPNNIMVG ANGAFHPRDC 60
VVSDASVPMH YVRDGWISQR EKFLNMLPPN PNYAVLPEAS GAHSMQVLQP PNSSRDEKVG 120
RIEEPTVNKE GNQLKKRQGG GAPKTPKAKK PRKPKDSSNN AVQRAKPAKK SMDVVINGID 180
MDISGIPIPV CSCTGTPQQC YRWGCGGWQS ACCTTNVSMY PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEGYNFVNP IDLRTHWAKH GTNKFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
