PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G149600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 185aa    MW: 21255.1 Da    PI: 8.6235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G149600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l++ ++ +G   W++ ar  g++Rt+k+c++rw++yl
  Manes.15G149600.1.p 15 KGPWTMEEDFILINHIANHGESVWNSLARAAGLKRTGKSCRLRWLNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.51.3e-1768111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Manes.15G149600.1.p  68 RGNITPEEQLLIMELHAKWGNK-WSKIAKHLP-GRTDNEIKNYWRT 111
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-21765IPR009057Homeodomain-like
PROSITE profilePS5129413.0871062IPR017930Myb domain
SuperFamilySSF466891.72E-2913109IPR009057Homeodomain-like
SMARTSM007172.7E-111464IPR001005SANT/Myb domain
PfamPF002494.1E-141562IPR001005SANT/Myb domain
CDDcd001671.34E-81762No hitNo description
PROSITE profilePS5129425.45863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2566116IPR009057Homeodomain-like
SMARTSM007175.2E-1567115IPR001005SANT/Myb domain
PfamPF002491.6E-1668111IPR001005SANT/Myb domain
CDDcd001671.70E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEKKPCNSLG NEVRKGPWTM EEDFILINHI ANHGESVWNS LARAAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNKW SKIAKHLPGR TDNEIKNYWR TRIQKYIKQE  120
ETFAGQSCEI KEHASTSLQV SGMIDTYSPQ SYQETLETFP GATLAPQSTQ ACWSFEDVWS  180
THFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-26911721128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G149600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596013.11e-138myb-related protein 305-like
SwissprotP813914e-83MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2C9UH411e-136A0A2C9UH41_MANES; Uncharacterized protein
STRINGcassava4.1_021053m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-78myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]