PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G155500.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 618aa    MW: 72225.3 Da    PI: 7.7796
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G155500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1927.5e-2973161190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r++++++  + +r+r+etr+gC a+l++++++dgk++vt++e++HnHel+
  Manes.15G155500.2.p  73 EFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDNRD-LNVKRPRKETRIGCMAQLVISRQSDGKYRVTHFEEKHNHELV 161
                          6*******************************************999.9999************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-2673161IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26282375IPR018289MULE transposase domain
PfamPF044348.8E-4559595IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.594562598IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MTIARQPYGK FRVTRFETQH NHEFVTPSTA HMLPSQKRLT FAQAVEADLA KSSGLDRIPK  60
LGMGFDSEDH AYEFYNAYAG RVGFSVRKDY VNRSKIDGAV ASRRFTCFRE GFRQKDNRDL  120
NVKRPRKETR IGCMAQLVIS RQSDGKYRVT HFEEKHNHEL VAACRVRTLR SQKRQATAQV  180
EGNGVDGSTT QPKLVSGLLC NAVGDQDVHG YQPIDCNSKL PFRKMRDMKE GEAERLQQYF  240
QSKQLKNPSF FYSMQLDADD QITNIFWADA KMLVDYNDFG DVVCFDTSYR LYKDCRPFVA  300
FIGVNHHKQM MVFSAGFLYD ETIDSYKWLF RTFIEAMSGK KPKTILTDQD AVIAEAIDSV  360
LPEVHCRICV WHVYQRAVKQ LNHMFVGSGS FINDLSSCFF EHEEDEPFIN AWNNMLDAYG  420
LWENEWLHQM FKEREQWATA YGRHIFCADI RNVQLCESFT ASLRKYLKFD FEVISFFKHL  480
GKILNDWHYK ELEDNYDMSQ RLPRVMGDVI LLKHAREIYT PKIFELLQQE YETSLNILIN  540
QCTENGSMFE YKVSIYGQQQ EYRVRFNSSE DIVACDCMKF EFMGVLCCHA LKVLDFRNIK  600
MLPSQYILKR WTRDARV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G155500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593444.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2C9UGE10.0A0A2C9UGE1_MANES; Uncharacterized protein
STRINGEOY026430.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-124FAR1-related sequence 5