PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G155700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 324aa MW: 37264.1 Da PI: 9.5733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G155700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	157	180	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F + +L +H+ + H Manes.15G155700.1.p 157 WRCGYCKKEFYDEKYLDKHLDNrH 180 58*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	159	180	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MATFYWLVPA VGMAVSFLPP CKTMRRLLGN RKNTYICRFS IRNAKKGMAI TSKQFLVFLF 60 LCLANSIQFS AVSSSTSPQG YQEHAVVRTL KQEQGNAHEV HCSRERSRAA WKIIEEYLMP 120 FVEKEQYQIP IRCRLHPAND LYRDQEEHKL QEDINEWRCG YCKKEFYDEK YLDKHLDNRH 180 FDLLNVSQGR CLADVCGALH CDQVMDSATR KTKCNPAAAA RNRHLCESLA QSCFPVNEGP 240 SAHRLNEFFL RQFCDAHTCT GHQKPFSKGG KKQTSILYII LSVLILMLLL LFYCFVYLYR 300 RGTKRGAQGL KRISKSGHQK KSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G155700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593684.1	0.0	uncharacterized protein LOC110601019 isoform X1
TrEMBL	A0A2C9UGA0	0.0	A0A2C9UGA0_MANES; Uncharacterized protein
STRING	cassava4.1_014625m	1e-169	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-101	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Manes.15G155700.1.p