PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G161800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 253aa MW: 28519.1 Da PI: 8.9934

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G161800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	97	119	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C++++++ +L H + H Manes.15G161800.1.p 97 SCSVCSRVYPTARLLSIHVSEaH 119 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.85	69	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.8	96	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	134	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAMAVDMDAK EELGFPYWTP VRRRFGPDSP FFAYGNIQRE LFAKQVALDL TEDEKNQLQN 60 LADEDGRDIF CPIVGCGSRL TSLEDFEDHY NARHTASCSV CSRVYPTARL LSIHVSEAHD 120 SFFQAKVARG YAMYECLVEG CGLKFKNYKS RQQHLVDKHK FPSAFEFFKK AHPSKKARQK 180 QRNQGIQKRG ETSNKMEVEG ETIDGLVSAV SRLSTSDSSP SSISFGRHHT RGFMFLPRTV 240 QRGNSTQSGT KN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G161800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593677.1	0.0	zinc finger protein 511
TrEMBL	A0A2C9UHJ0	0.0	A0A2C9UHJ0_MANES; Uncharacterized protein
STRING	cassava4.1_014543m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9718	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-114	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Manes.15G161800.1.p