PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G162900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 89aa MW: 9890.85 Da PI: 7.6803

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G162900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	16	62	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +W++ E +l+ a +++ ++ +W Ia+ +g gR+++++k ++q + Manes.15G162900.1.p 16 SWSPRENKLFEIALALYDKEttdRWQNIAKAVG-GRSAEEVKTHYQLL 62 7***************99*********.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	9	63	IPR017877	Myb-like domain
SMART	SM00717	6.6E-8	13	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-6	14	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.07E-13	15	71	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	16	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-5	21	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MSSSSYQASR NPSSSSWSPR ENKLFEIALA LYDKETTDRW QNIAKAVGGR SAEEVKTHYQ 60 LLIKDVEHIE SGRVPFPNYN SGRSQADA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-29	7	81	1	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G162900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660681.1	8e-43	protein RADIALIS-like 3
Swissprot	Q58FS3	1e-28	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A2C9UHK1	1e-58	A0A2C9UHK1_MANES; Uncharacterized protein
STRING	cassava4.1_028960m	2e-59	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	4e-28	RAD-like 6

Link Out ? help Back to Top
Phytozome	Manes.15G162900.1.p

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]