PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G168100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 246aa MW: 26667.4 Da PI: 6.7844

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G168100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Manes.15G168100.1.p 75 YTCTFCRREFRSAQALGGHMNVH 97 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	72	102	No hit	No description
PROSITE profile	PS50157	11.157	75	102	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-5	75	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	75	97	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAAELGLLSL TQLHHQNPSQ IQQDQPQNSS SSSSSSTFWM WNPKQTQEDD DSWEVRAFQE 60 DTGNAMGTTW PPRSYTCTFC RREFRSAQAL GGHMNVHRRD RARLHQTVLQ PPPGSIKPPS 120 SSTSTSSSAI LIPAQEFSTN GGGLCLLYQL PNPNGVFSST AMNACAVESP TLLSISPYHH 180 SNLIGQALNY PAASSLINSS HFYSSKPESA ASFDKCKEMG SEELDLELRL GHRSTKSSSS 240 SSSPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-13	70	97	2	29	superman protein
2l1o_A	3e-13	70	97	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G168100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM453336	0.0	HM453336.1 Manihot esculenta palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595755.1	0.0	transcriptional regulator SUPERMAN-like
TrEMBL	A0A2C9UHR6	1e-180	A0A2C9UHR6_MANES; Uncharacterized protein
STRING	cassava4.1_014825m	1e-180	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3525	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	2e-44	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.15G168100.1.p