PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G190300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

BES1

Protein Properties

Length: 258aa MW: 28628.5 Da PI: 4.8396

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G190300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	100.9	2.5e-31	1	117	29	140
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssalaspv.esysaspkss 117 ++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++ p ++++ + sp ss slk++a+++ + + + ++ + + Manes.15G190300.1.p 1 MLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPPPS-QMASFTVRSVESPVSS--ASLKNCAVKAAAlDCQPSVVRID 87 79**************************************876666.5555444445555555..56999998766515666778899 PP DUF822 118 sfpspssldsislasa.......asllpvl 140 +++sp slds+ +++ a+ +p+ Manes.15G190300.1.p 88 ESLSPPSLDSVVMTERetrsekfANASPIN 117 *********9998854444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-33	1	122	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	8.81E-22	140	225	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	8.3E-24	143	226	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.9E-8	167	224	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-6	180	194	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-6	201	219	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MLAGLRQYGN FPLPARADMN DVLAALAREA GWTVEADGTT YRQSPPPSQM ASFTVRSVES 60 PVSSASLKNC AVKAAALDCQ PSVVRIDESL SPPSLDSVVM TERETRSEKF ANASPINSVD 120 CLDADQLIQD VRSGEHDDDF AGTSYVPVYA FLATGFINNF CQLVDPEGVR QELSQMKSLD 180 IDGIVVECWW GIVEAWSPQK YVWSGYRELF NIIREFKLKL QMQIGLDSLM KKGQLVVIAH 240 SHLVTWRSKN CKDCWRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	8e-16	144	221	10	87	BETA-AMYLASE
1byb_A	8e-16	144	221	10	87	BETA-AMYLASE
1byc_A	8e-16	144	221	10	87	BETA-AMYLASE
1byd_A	8e-16	144	221	10	87	BETA-AMYLASE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G190300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594905.1	1e-157	beta-amylase 8 isoform X1
Refseq	XP_021594906.1	1e-157	beta-amylase 8 isoform X2
Refseq	XP_021594907.1	1e-157	beta-amylase 8 isoform X3
Swissprot	Q9FH80	1e-101	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2C9UHE5	0.0	A0A2C9UHE5_MANES; Beta-amylase
STRING	cassava4.1_023043m	1e-164	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	1e-103	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Manes.15G190300.1.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]