PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G011100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 727aa    MW: 80010.5 Da    PI: 6.0587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G011100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.2e-2058113156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Manes.16G011100.1.p  58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                          688999***********************************************998 PP
2START206.97.8e-652474661206
                          HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          ela +a++el+++a+a+ep+Wv      e +n++e+l+ f+++ +      ++e +r+s+vv+m++++lve+l+d++ qW+  +     +
  Manes.16G011100.1.p 247 ELAVAAMEELMRMAQAGEPLWVPGEnssEVLNEEEYLRAFPRGIGprplgLRSESSRESAVVIMNHVNLVEILMDVN-QWSAVFCgivsR 335
                          57899*****************87777799************999********************************.******99999* PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+tle +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+ds +  p      +++++pSg++i++++ng+
  Manes.16G011100.1.p 336 AMTLEILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDSLRGSPI----SKSRRRPSGCVIQELPNGY 421
                          ****************************************************************995....566679************* PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skv+wveh+++++r +h l+r+lv+sgla+gak+wva l+rqce+
  Manes.16G011100.1.p 422 SKVIWVEHIEVDDRAVHDLYRPLVNSGLAFGAKRWVAVLDRQCER 466
                          *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-2244113IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1945115IPR009057Homeodomain-like
PROSITE profilePS5007116.82755115IPR001356Homeobox domain
SMARTSM003891.8E-1856119IPR001356Homeobox domain
CDDcd000869.62E-1958116No hitNo description
PfamPF000462.3E-1758113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084843.961238469IPR002913START domain
SuperFamilySSF559619.38E-34238468No hitNo description
CDDcd088752.73E-125242465No hitNo description
SMARTSM002342.1E-65247466IPR002913START domain
PfamPF018522.1E-54248466IPR002913START domain
Gene3DG3DSA:3.30.530.209.9E-5349464IPR023393START-like domain
SuperFamilySSF559611.5E-26486717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MFQPNMFESH HMFDMTPKSS ENDLEKPNKD DDYETKSGTE ITETPSGDDQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKAQHERTE  120
NAILKAENEK LRAENNRYKE ALSNASCPNC GGPAALGEMS FDEQHLRIEN VRLREEINRI  180
SGIASKYAGK PLSTFSHLSS HLHSRSLDLG VSNFGAQSGY VGEMYGATEI LRSISGPTEA  240
EKPMIVELAV AAMEELMRMA QAGEPLWVPG ENSSEVLNEE EYLRAFPRGI GPRPLGLRSE  300
SSRESAVVIM NHVNLVEILM DVNQWSAVFC GIVSRAMTLE ILSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHVDGTWAVV DVSLDSLRGS PISKSRRRPS GCVIQELPNG  420
YSKVIWVEHI EVDDRAVHDL YRPLVNSGLA FGAKRWVAVL DRQCERLASS MAINIPAGDL  480
SVITSPEGRK SMLKLAERMV MSFCSGVGAS TAHAWTTLSP SGSDDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVPPKRV FAFLSDENHR SEWDILSNGG QVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDISAMNI VLSGGDPDYV ALLPSGFAIL  660
PDGQGFNAGG IHDVRSGCAL LTVAFQILVD SAPTAKLSLG SVATVNNLIK CTVERIKTAV  720
PSENNA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G011100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596887.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2C9U8M80.0A0A2C9U8M8_MANES; Uncharacterized protein
STRINGcassava4.1_024979m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]