PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G026700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 222aa    MW: 25302.4 Da    PI: 9.5637
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G026700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32391452102
                          HHHHHHHHHCTG...............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXT CS
         HSF_DNA-bind   2 Flkklyeilede...............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskske 76 
                          Fl+k+y++le++               + k+++sw+++g+ f+v+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk++++        
  Manes.16G026700.1.p  39 FLSKTYDLLEENgegsssssgedsggvNGKKIVSWNDDGTGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKL------- 121
                          9*********8888888899999999999*************************************************99876....... PP

                          TSEEEEESXXXXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  77 kiweFkhksFkkgkkellekikrkks 102
                            weFkh++F+kg++++l +i rkk 
  Manes.16G026700.1.p 122 --WEFKHEKFQKGNRQMLVEITRKKC 145
                          ..*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3432138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-3935143IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-2939143IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-2467143IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAKNDLSEHN RSIIISRRSS ASSSSSSQQS PRIKIPAPFL SKTYDLLEEN GEGSSSSSGE  60
DSGGVNGKKI VSWNDDGTGF IVWSPAEFSE LTLPRYFKHN NFSSFIRQLN TYGFKKTSSK  120
LWEFKHEKFQ KGNRQMLVEI TRKKCEPSIF PAYLKASNEE NASAAVEDND RLLLLEENNN  180
LKRENLELQM QLTQFKSLEI KLLDFLSHYM GSHHNKIRRL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-15391434104Putative transcription factor
5d5x_B4e-15391434104Putative transcription factor
5d5x_E4e-15391434104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G026700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597998.11e-162heat stress transcription factor B-2a-like
TrEMBLA0A2C9U8E21e-161A0A2C9U8E2_MANES; Uncharacterized protein
STRINGcassava4.1_028406m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-32heat shock factor 4