PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G027000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LSD
Protein Properties Length: 96aa    MW: 10302.9 Da    PI: 8.2104
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G027000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35.2e-13630125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         Cg+Cr lLsYP GA++V+C++C+ V
  Manes.16G027000.1.p  6 CGSCRSLLSYPKGARNVQCSSCQMV 30
                         ***********************98 PP
2zf-LSD148.21.8e-154468125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC +lL+YP+GA+sVRC++C+++
  Manes.16G027000.1.p 44 CGGCAVLLMYPYGASSVRCSSCHFI 68
                         ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.5E-16333IPR005735Zinc finger, LSD1-type
PfamPF069438.5E-12630IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-134169IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-134468IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MAQMVCGSCR SLLSYPKGAR NVQCSSCQMV NFVLEAHEIG QVNCGGCAVL LMYPYGASSV  60
RCSSCHFITE IGVHNRRPPW SVIQGYPPPS PNPVQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G027000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598099.11e-64protein LOL2
SwissprotO654265e-37LOL2_ARATH; Protein LOL2
TrEMBLA0A251JDJ63e-63A0A251JDJ6_MANES; Uncharacterized protein
STRINGcassava4.1_020122m5e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-39lsd one like 2