PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G027000.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LSD

Protein Properties

Length: 83aa MW: 9062.56 Da PI: 8.6098

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G027000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.7	4e-13	6	30	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+ V Manes.16G027000.3.p 6 CGSCRSLLSYPKGARNVQCSSCQMV 30 ***********************98 PP
2	zf-LSD1	39.2	1.1e-12	36	55	6	25
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 +lL+YP+GA+sVRC++C+++ Manes.16G027000.3.p 36 VLLMYPYGASSVRCSSCHFI 55 79****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.8E-16	3	33	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.4E-12	6	30	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-10	36	55	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.4E-9	37	56	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MAQMVCGSCR SLLSYPKGAR NVQCSSCQMV NFVLEVLLMY PYGASSVRCS SCHFITEIGV 60 HNRRPPWSVI QGYPPPSPNP VQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G027000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598099.1	1e-50	protein LOL2
Swissprot	O65426	7e-27	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2C9U892	4e-53	A0A2C9U892_MANES; Uncharacterized protein
STRING	cassava4.1_020122m	4e-50	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	lsd one like 2

Link Out ? help Back to Top
Phytozome	Manes.16G027000.3.p