PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G028800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 184aa    MW: 20740.7 Da    PI: 10.1263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G028800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-131061255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         r+ ++ +Er+RR++++   ++L +llP++   +s+K +s ++ L +A +YIk+Lq
  Manes.16G028800.1.p 10 RTDKKTIERNRRNQMKALCSKLNSLLPHQ---SSRKpMSLSDQLDQAAKYIKKLQ 61
                         88999***********************8...78888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.71E-7765No hitNo description
PROSITE profilePS5088811.763860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-12978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-91061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-111075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00441466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNSISSSR TDKKTIERNR RNQMKALCSK LNSLLPHQSS RKPMSLSDQL DQAAKYIKKL  60
QINLEKMRER KESLMGREER PPNSSSGSNG ATMRLRYPQI KVHEIGSALE VVLITGLETQ  120
FMFNEIIRIL HEEGAEIVNA SFSVLDDVVF HTIHSKVGDS SHSYGAARIS ERLKKFVPDA  180
NPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G028800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598063.11e-133transcription factor bHLH162
SwissprotF4JIJ73e-49BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2C9U8F71e-132A0A2C9U8F7_MANES; Uncharacterized protein
STRINGcassava4.1_021527m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]