PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G038200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 267aa    MW: 29058.1 Da    PI: 8.7056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G038200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-1177123354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR+riN  ++ Lr l+P       +K++Ka+ L ++++ +k+L
  Manes.16G038200.2.p  77 KSHSEAEKRRRERINAHLASLRGLVPCG-----EKMDKATLLAEVINQVKEL 123
                          58*************************6.....6************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.42874123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-977125No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1278127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1278126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1080129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.16E-5162230No hitNo description
Gene3DG3DSA:3.30.70.2603.5E-4163209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MISYNYNSSS ASSGHGYFNA LDPFSCSLEG SNGVLRGGSL VSQALVLDSE KGELVKAPAT  60
RIGKKGMSEA KVLAALKSHS EAEKRRRERI NAHLASLRGL VPCGEKMDKA TLLAEVINQV  120
KELKKNAMEA SKGLLIPMDD DEVKVETHDN GTGHGTLSFK AFLCCEYRPE LLSDIRQAVD  180
SLQLKMVDAE ISTLGSRLKL VLFLTSCRNK SAVDDHEATQ LLTNSIHQSL KSIMEKGYIS  240
AEYSPRTTLP NKRRRVSFFD SSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G038200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596198.10.0transcription factor bHLH30-like isoform X2
TrEMBLA0A2C9U9M10.0A0A2C9U9M1_MANES; Uncharacterized protein
STRINGcassava4.1_025964m1e-172(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-34bHLH family protein